Open Source Community

Learn, Build, and Share Protein Structure Science in Julia

Structural Bioinformatics in Julia unites researchers to create open, reproducible tools for protein structures and molecular discovery.

Three focus areas. One shared purpose.

Open communities building the foundations for structural biology and reproducible molecular discovery.

01

Structure and Dynamics

Tools for protein structures, conformational analysis, and simulation-ready workflows.

02

Pipelines and Interoperability

Composable data workflows bridging sequence, structure, visualization, and downstream analytics.

03

Education and Community

Shared examples, mentorship, and practical entry points for new contributors.

From raw data to discovery

Hand-curated packages for structural bioinformatics workflows.

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BiochemicalVisualization.jl

Visualization utilities for biochemical and structural biology data.

visualizationmodeling
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BioMakie.jl

Biology-focused plotting and interfaces on top of Makie.

visualizationanalysis
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ProtPlot.jl

Visualization tools for protein data and structural bioinformatics workflows.

visualization
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BiochemicalAlgorithms.jl

Algorithms for biochemical and structural bioinformatics analysis workflows.

analysisiomodeling
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Molly.jl

Molecular dynamics simulations in Julia for atomistic and coarse-grained systems.

modelingmolecular-dynamics
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ProtoSyn.jl

A Julia framework for molecular modeling, peptide design, and molecular simulation workflows.

modelinganalysis
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AssigningSecondaryStructure.jl

Tools for assigning and analyzing protein secondary structure features in Julia workflows.

analysis
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TMscore.jl

Julia utilities for TM-score based structural comparison and evaluation.

analysis
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Backboner.jl

Backbone-focused molecular modeling utilities for structural bioinformatics workflows.

modeling
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Kabsch.jl

Rigid-body alignment with the Kabsch algorithm for structural analysis and superposition.

analysismodeling
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DihedralParametrization.jl

Parameterization tools for dihedral terms in molecular modeling pipelines.

modeling
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GPCRAnalysis.jl

Analysis workflows for GPCR-related molecular and structural datasets in Julia.

analysis
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MIToS.jl

Protein sequence and structure analysis toolkit for molecular informatics and bioinformatics.

analysispipelines
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JuliaBioinformaticsJLLs

Binary dependency wrappers and interoperability building blocks for Julia bioinformatics workflows.

iopipelines

Not exactly what you are looking for?

Check out other GitHub organizations in the Julia scientific ecosystem.

BioJulia

Fast, open, and composable tools for biological sequence and structure analysis in Julia.

Molecular Simulation in Julia

A Julia community focused on molecular simulation methods, software, and scientific workflows.

JuliaHealth

Open software for health, medicine, medical imaging, and computational physiology in Julia.

Get involved

Help shape the Structural Bioinformatics in Julia ecosystem.

Start by opening an issue in the organization profile repository or proposing a package card via pull request.